Variant report

Variant	rs12186048
Chromosome Location	chr3:34460643-34460644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1013979	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1191622	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1191624	0.88[ASN][1000 genomes]
rs1191625	0.82[ASN][1000 genomes]
rs1211518	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1212278	0.88[ASN][1000 genomes]
rs12487411	0.90[ASN][1000 genomes]
rs12629841	0.87[ASN][1000 genomes]
rs13083647	0.84[ASN][1000 genomes]
rs1317104	0.94[ASN][1000 genomes]
rs1358615	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1358616	0.83[ASN][1000 genomes]
rs1406568	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1518885	0.91[ASN][1000 genomes]
rs1518886	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1518887	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1529075	0.90[ASN][1000 genomes]
rs17031629	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17031637	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1881685	0.92[ASN][1000 genomes]
rs1919621	0.90[ASN][1000 genomes]
rs1919622	0.83[ASN][1000 genomes]
rs1949470	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2077806	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2167040	0.87[ASN][1000 genomes]
rs2218729	0.87[ASN][1000 genomes]
rs2951002	0.91[ASN][1000 genomes]
rs34843235	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34896219	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35488362	0.87[ASN][1000 genomes]
rs35703530	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35905703	0.87[ASN][1000 genomes]
rs35929503	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4533591	0.86[ASN][1000 genomes]
rs4678468	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4678469	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs67251788	0.90[ASN][1000 genomes]
rs6768570	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6804250	0.86[ASN][1000 genomes]
rs9816663	0.86[ASN][1000 genomes]
rs9824579	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9842247	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9858557	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv876683	chr3:34451940-34536095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34460200-34460800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr3:34460200-34461000	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:34460200-34461000	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr3:34460600-34460800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
5	chr3:34460600-34461400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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