Variant report

Variant	rs12188020
Chromosome Location	chr5:59548973-59548974
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10514887	0.89[TSI][hapmap]
rs10939838	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10939839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11742541	1.00[CHD][hapmap];0.88[GIH][hapmap]
rs11743928	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11745357	0.89[TSI][hapmap]
rs11745887	0.83[EUR][1000 genomes]
rs12186826	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12187669	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13157125	1.00[CHD][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs13177765	0.85[TSI][hapmap]
rs13177799	0.85[TSI][hapmap]
rs13186687	1.00[CHD][hapmap]
rs17376761	0.89[TSI][hapmap]
rs17385322	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17442232	0.85[TSI][hapmap]
rs17450732	0.83[EUR][1000 genomes]
rs2113071	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2961900	0.85[TSI][hapmap]
rs35381370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35415111	0.84[EUR][1000 genomes]
rs3857299	0.85[TSI][hapmap]
rs4270654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4513649	1.00[CHD][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs4577666	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6868695	0.86[EUR][1000 genomes]
rs6868850	0.86[EUR][1000 genomes]
rs6889641	0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs71627994	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71627995	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627996	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627997	0.84[EUR][1000 genomes]
rs71627998	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7709269	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4847	chr5:59523591-59569307	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59546200-59551400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:59546400-59555200	Weak transcription	Primary B cells from cord blood	blood

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