Variant report

Variant	rs12188632
Chromosome Location	chr5:92215789-92215790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10063831	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1010127	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10434707	0.86[AMR][1000 genomes]
rs13167254	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17082694	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1817741	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2879968	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6874701	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6876411	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6895635	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7710387	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7724557	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7736957	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs963139	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92214600-92223200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:92214600-92223400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:92215000-92216000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:92215000-92217000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:92215000-92217400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:92215200-92216000	Enhancers	Fetal Stomach	stomach
7	chr5:92215200-92216000	Enhancers	Ovary	ovary
8	chr5:92215200-92217000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:92215400-92222200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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