The 2.0 version of rSNPBase

Variant report

Variant rs12189562
Chromosome Location chr6:101168679-101168680
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:101119400-101181200 Weak transcription Left Ventricle heart
2 chr6:101142400-101189600 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr6:101145400-101175600 Weak transcription Stomach Smooth Muscle stomach
4 chr6:101145600-101169200 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr6:101147800-101190000 Weak transcription Primary T cells fromperipheralblood blood
6 chr6:101148200-101172200 Weak transcription HSMMtube muscle
7 chr6:101148200-101175600 Weak transcription Fetal Muscle Leg muscle
8 chr6:101148200-101189600 Weak transcription Placenta Placenta
9 chr6:101148600-101173200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr6:101148600-101177800 Weak transcription Fetal Lung lung
11 chr6:101148600-101184400 Weak transcription Primary hematopoietic stem cells blood
12 chr6:101149400-101174400 Weak transcription Esophagus oesophagus
13 chr6:101149600-101190000 Weak transcription Duodenum Mucosa Duodenum
14 chr6:101149800-101175000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr6:101150000-101172400 Weak transcription Monocytes-CD14+_RO01746 blood
16 chr6:101150000-101174800 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr6:101150200-101190000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr6:101150200-101190000 Weak transcription Ovary ovary
19 chr6:101150200-101190600 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr6:101150400-101175600 Weak transcription NHEK skin
21 chr6:101150600-101170000 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr6:101150600-101170000 Weak transcription Fetal Intestine Large intestine
23 chr6:101150600-101172000 Weak transcription GM12878-XiMat blood
24 chr6:101151000-101174800 Weak transcription iPS-20b Cell Line embryonic stem cell
25 chr6:101151400-101185600 Weak transcription HUES6 Cell Line embryonic stem cell
26 chr6:101156000-101190000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
27 chr6:101157400-101190000 Weak transcription HepG2 liver
28 chr6:101159600-101172400 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr6:101161000-101171800 Weak transcription Brain Inferior Temporal Lobe brain
30 chr6:101161400-101174800 Weak transcription Colon Smooth Muscle Colon
31 chr6:101161600-101185800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr6:101161800-101170400 Weak transcription HSMM muscle
33 chr6:101162000-101189600 Weak transcription HMEC breast
34 chr6:101162400-101172000 Weak transcription Primary T cells from cord blood blood
35 chr6:101163000-101172000 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr6:101163000-101173200 Weak transcription Primary B cells from peripheral blood blood
37 chr6:101163200-101179600 Weak transcription Fetal Intestine Small intestine
38 chr6:101163600-101172400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
39 chr6:101163800-101170000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr6:101164000-101170400 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr6:101164600-101190200 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr6:101164600-101190200 Weak transcription Fetal Thymus thymus
43 chr6:101165000-101174600 Weak transcription Primary monocytes fromperipheralblood blood
44 chr6:101166000-101172400 Weak transcription H1 Cell Line embryonic stem cell
45 chr6:101166000-101172400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr6:101166200-101170200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
47 chr6:101166200-101211000 Weak transcription NH-A brain
48 chr6:101166400-101172000 Weak transcription Primary B cells from cord blood blood
49 chr6:101167000-101168800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
50 chr6:101167200-101169000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015