Variant report

Variant	rs12191405
Chromosome Location	chr6:150497682-150497683
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150495902..150498289-chr6:150504016..150506860,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10457859	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12201610	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12211097	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12211587	0.87[EUR][1000 genomes]
rs59114788	0.90[EUR][1000 genomes]
rs6907224	0.95[EUR][1000 genomes]
rs746984	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9478557	0.95[EUR][1000 genomes]
rs9479904	0.95[EUR][1000 genomes]
rs9479919	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150488200-150497800	Weak transcription	Colonic Mucosa	Colon
2	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:150491600-150501400	Weak transcription	HMEC	breast
4	chr6:150494400-150501000	Weak transcription	Fetal Brain Female	brain
5	chr6:150496200-150498200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:150496200-150498200	Enhancers	Small Intestine	intestine
7	chr6:150496200-150499600	Enhancers	Fetal Intestine Large	intestine
8	chr6:150496200-150499600	Enhancers	Fetal Intestine Small	intestine
9	chr6:150496200-150499600	Enhancers	Right Ventricle	heart
10	chr6:150496200-150499600	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr6:150496200-150499600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:150496400-150499600	Enhancers	Fetal Muscle Leg	muscle
13	chr6:150496800-150497800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:150496800-150498200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:150496800-150498200	Enhancers	Stomach Mucosa	stomach
16	chr6:150496800-150499400	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:150496800-150499600	Enhancers	Psoas Muscle	Psoas
18	chr6:150497000-150502000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:150497200-150497800	Enhancers	NHEK	skin
20	chr6:150497200-150498400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:150497200-150498600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:150497200-150498800	Enhancers	Fetal Muscle Trunk	muscle
23	chr6:150497200-150499400	Enhancers	Esophagus	oesophagus
24	chr6:150497200-150499400	Enhancers	Lung	lung
25	chr6:150497200-150499600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:150497200-150499600	Enhancers	Pancreas	Pancrea
27	chr6:150497200-150499600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr6:150497200-150499800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:150497200-150502400	Enhancers	Left Ventricle	heart
30	chr6:150497400-150498200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:150497400-150498400	Enhancers	Right Atrium	heart
32	chr6:150497400-150499600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:150497400-150499600	Enhancers	Placenta	Placenta
34	chr6:150497400-150499800	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:150497600-150498000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr6:150497600-150498400	Flanking Active TSS	Fetal Heart	heart
37	chr6:150497600-150498800	Enhancers	K562	blood
38	chr6:150497600-150499600	Enhancers	Fetal Lung	lung

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