Variant report

Variant	rs12192489
Chromosome Location	chr6:77595646-77595647
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10455322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969816	1.00[AFR][1000 genomes]
rs12174426	1.00[AFR][1000 genomes]
rs12191933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12661295	1.00[AFR][1000 genomes]
rs13211725	1.00[AFR][1000 genomes]
rs1335436	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1414184	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1462469	1.00[AFR][1000 genomes]
rs1570260	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1598865	1.00[AFR][1000 genomes]
rs1598866	1.00[AFR][1000 genomes]
rs1819550	0.93[EUR][1000 genomes]
rs1981128	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34264360	1.00[AFR][1000 genomes]
rs35236070	1.00[AFR][1000 genomes]
rs35512517	1.00[AFR][1000 genomes]
rs68040563	1.00[AFR][1000 genomes]
rs68139108	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs68172709	1.00[AFR][1000 genomes]
rs9341621	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9343499	1.00[AFR][1000 genomes]
rs9343513	1.00[AFR][1000 genomes]
rs9350675	1.00[AFR][1000 genomes]
rs9350677	1.00[AFR][1000 genomes]
rs9350684	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9350686	1.00[AFR][1000 genomes]
rs9352390	1.00[AFR][1000 genomes]
rs9352400	1.00[AFR][1000 genomes]
rs9352403	1.00[AFR][1000 genomes]
rs9359223	1.00[AFR][1000 genomes]
rs9359230	1.00[AFR][1000 genomes]
rs9361152	1.00[AFR][1000 genomes]
rs9361156	1.00[AFR][1000 genomes]
rs9361157	1.00[AFR][1000 genomes]
rs9361162	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv886222	chr6:77577055-77734250	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv603806	chr6:77587889-77787815	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1021812	chr6:77589219-77792085	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77591400-77596600	Weak transcription	Pancreas	Pancrea
2	chr6:77595200-77595800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:77595200-77596200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:77595200-77596200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:77595200-77596200	Enhancers	Osteobl	bone
6	chr6:77595200-77596800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:77595200-77597000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:77595400-77595800	Enhancers	Aorta	Aorta
9	chr6:77595400-77595800	Enhancers	Liver	Liver
10	chr6:77595400-77595800	Enhancers	Psoas Muscle	Psoas
11	chr6:77595400-77595800	Enhancers	HMEC	breast
12	chr6:77595400-77596000	Enhancers	Adipose Nuclei	Adipose
13	chr6:77595600-77596000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:77595600-77596600	Weak transcription	Ovary	ovary

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