Variant report

Variant	rs12192839
Chromosome Location	chr6:133600591-133600592
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10872402	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12175835	0.82[AMR][1000 genomes]
rs12190309	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12193038	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12193158	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12202540	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12204996	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12206438	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1415858	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2180729	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28405267	0.82[AMR][1000 genomes]
rs28620929	0.83[EUR][1000 genomes]
rs3756869	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3756871	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3756872	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3777785	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3777796	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3777799	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55947866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56377439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62430275	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62430313	0.86[AMR][1000 genomes]
rs62430315	0.82[AMR][1000 genomes]
rs6569873	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6569874	0.93[ASN][1000 genomes]
rs6912995	0.87[EUR][1000 genomes]
rs6919155	0.81[ASN][1000 genomes]
rs6940510	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746298	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7754501	0.87[EUR][1000 genomes]
rs9321393	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9373038	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9373041	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9373043	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9373047	0.82[AMR][1000 genomes]
rs9373048	0.81[ASN][1000 genomes]
rs9375942	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9375943	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9375948	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9375949	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9375955	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9385640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9385641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9385642	0.93[ASN][1000 genomes]
rs9389052	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9389059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9389060	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9389061	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9389062	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9389064	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9389066	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9399053	0.87[EUR][1000 genomes]
rs9399054	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9399055	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9399057	0.82[AMR][1000 genomes]
rs9399058	0.81[ASN][1000 genomes]
rs9402487	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9402489	0.87[EUR][1000 genomes]
rs9402493	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9402494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9402497	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9402498	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9483560	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886678	chr6:133550279-133631190	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886679	chr6:133578733-133635272	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133594200-133603200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:133594200-133603800	Weak transcription	Fetal Kidney	kidney
3	chr6:133594200-133603800	Weak transcription	Psoas Muscle	Psoas
4	chr6:133594200-133607000	Weak transcription	Hela-S3	cervix
5	chr6:133594200-133612800	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:133594200-133614000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133594200-133617200	Weak transcription	Left Ventricle	heart
8	chr6:133599000-133610400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:133599000-133629000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:133599800-133612400	Weak transcription	A549	lung
11	chr6:133600000-133606400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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