Variant report

Variant	rs12196906
Chromosome Location	chr6:11920023-11920024
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11917193..11921294-chr6:12011034..12015671,5	K562	blood:
2	chr6:11918372..11921053-chr6:11921145..11922957,3	MCF-7	breast:
3	chr6:11919258..11923215-chr6:12007776..12010978,4	MCF-7	breast:
4	chr6:11917994..11921432-chr6:11923152..11925432,3	K562	blood:
5	chr6:11919510..11924906-chr6:11928261..11931879,6	K562	blood:
6	chr6:11918788..11920525-chr6:12013699..12015737,2	K562	blood:
7	chr6:11919166..11921796-chr6:11941953..11944553,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction
ENSG00000229896	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10456449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12191778	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12194391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12196304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12199144	1.00[EUR][1000 genomes]
rs12201079	1.00[EUR][1000 genomes]
rs12201333	1.00[EUR][1000 genomes]
rs12202320	0.89[CHB][hapmap]
rs12202388	1.00[CHB][hapmap]
rs12203175	1.00[EUR][1000 genomes]
rs12205721	0.88[CHB][hapmap]
rs12207789	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[EUR][1000 genomes]
rs12209572	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[EUR][1000 genomes]
rs12211163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12213818	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12214146	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61708065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6903153	1.00[AMR][1000 genomes]
rs7753363	1.00[AMR][1000 genomes]
rs7775953	1.00[AMR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11917600-11921200	Weak transcription	Right Atrium	heart
2	chr6:11918000-11920200	Enhancers	Fetal Stomach	stomach
3	chr6:11918000-11920200	Enhancers	Placenta Amnion	Placenta Amnion
4	chr6:11918000-11922200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:11918200-11920200	Enhancers	Fetal Lung	lung
6	chr6:11918200-11920600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:11918200-11921000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:11918200-11921800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:11918200-11921800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:11918200-11922200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:11918200-11922200	Enhancers	HSMMtube	muscle
12	chr6:11918400-11922400	Enhancers	NHEK	skin
13	chr6:11918400-11927800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:11918600-11920600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:11918600-11921400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:11919000-11921200	Weak transcription	Small Intestine	intestine
17	chr6:11919000-11922200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:11919200-11920400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:11919200-11920400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:11919200-11920400	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:11919400-11920600	Weak transcription	Placenta	Placenta
22	chr6:11919400-11920600	Weak transcription	A549	lung
23	chr6:11919400-11920800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr6:11919400-11921000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:11919400-11921200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:11919400-11921200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr6:11919400-11921200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:11919400-11921200	Weak transcription	Right Ventricle	heart
29	chr6:11919400-11922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:11919400-11922200	Enhancers	Hela-S3	cervix
31	chr6:11919400-11922200	Enhancers	NHDF-Ad	bronchial
32	chr6:11919400-11922200	Enhancers	NHLF	lung
33	chr6:11919400-11924400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:11919400-11927600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:11919400-11927800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:11919600-11920200	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:11919600-11920800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:11919600-11921000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:11919800-11920800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:11919800-11920800	Weak transcription	Fetal Intestine Large	intestine
41	chr6:11919800-11920800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:11919800-11920800	Weak transcription	HSMM	muscle
43	chr6:11919800-11920800	Weak transcription	NH-A	brain
44	chr6:11919800-11920800	Weak transcription	Osteobl	bone
45	chr6:11919800-11921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:11919800-11921200	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:11919800-11921200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:11919800-11921200	Enhancers	K562	blood
49	chr6:11920000-11920400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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