Variant report

Variant	rs12198091
Chromosome Location	chr6:74838268-74838269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74835506..74837786-chr6:74837930..74840707,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10485388	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11751061	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11751175	0.97[EUR][1000 genomes]
rs11751771	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11754164	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11754468	0.81[ASN][1000 genomes]
rs11756254	0.97[EUR][1000 genomes]
rs11757198	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11759133	0.81[ASN][1000 genomes]
rs12190509	0.97[EUR][1000 genomes]
rs12191462	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12191866	0.97[EUR][1000 genomes]
rs12193999	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12202104	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12202674	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12205582	0.97[EUR][1000 genomes]
rs12205749	0.97[EUR][1000 genomes]
rs12206043	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12209564	0.94[EUR][1000 genomes]
rs12209571	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12213297	0.94[EUR][1000 genomes]
rs12215639	0.97[EUR][1000 genomes]
rs3923228	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4279396	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4537105	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4546447	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4644011	0.97[EUR][1000 genomes]
rs55755114	0.83[ASN][1000 genomes]
rs55768795	0.81[ASN][1000 genomes]
rs55784940	0.81[ASN][1000 genomes]
rs55789428	0.97[EUR][1000 genomes]
rs56004196	0.85[ASN][1000 genomes]
rs56104278	0.97[EUR][1000 genomes]
rs56138029	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56362119	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56396434	0.97[EUR][1000 genomes]
rs66472340	0.97[EUR][1000 genomes]
rs66865230	0.97[EUR][1000 genomes]
rs72950543	0.85[ASN][1000 genomes]
rs72950546	0.85[ASN][1000 genomes]
rs72952344	0.87[ASN][1000 genomes]
rs72952371	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72952395	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72952398	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72954314	0.81[ASN][1000 genomes]
rs72955171	0.97[EUR][1000 genomes]
rs72955173	0.97[EUR][1000 genomes]
rs72955185	0.97[EUR][1000 genomes]
rs72955196	0.97[EUR][1000 genomes]
rs72955199	0.97[EUR][1000 genomes]
rs72955201	0.94[EUR][1000 genomes]
rs72962230	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72964214	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv511354	chr6:74828682-74851053	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv603752	chr6:74832524-74852012	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv603753	chr6:74832524-74852508	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74838000-74838800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:74838200-74838600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links