Variant report

Variant	rs12198183
Chromosome Location	chr6:11960812-11960813
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11845664..11847912-chr6:11959676..11961554,2	K562	blood:
2	chr6:11959092..11961876-chr6:11972150..11975452,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10456088	1.00[ASN][1000 genomes]
rs10456449	0.89[CHB][hapmap]
rs12189667	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes]
rs12190917	1.00[EUR][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196906	0.89[CHB][hapmap]
rs12199144	0.88[ASN][1000 genomes]
rs12201079	0.86[ASN][1000 genomes]
rs12201333	0.87[ASN][1000 genomes]
rs12202320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202981	1.00[EUR][1000 genomes]
rs12203175	0.92[ASN][1000 genomes]
rs12204035	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12205721	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12207789	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12208282	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12209572	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs12210876	1.00[EUR][1000 genomes]
rs12211163	0.88[CHB][hapmap]
rs12212747	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12213062	0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12213771	0.89[ASN][1000 genomes]
rs12216165	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes]
rs6939106	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11959600-11961200	Weak transcription	K562	blood
2	chr6:11960800-11961200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:11960800-11961400	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links