Variant report

Variant	rs12199525
Chromosome Location	chr6:55005929-55005930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11966562	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12191770	0.80[ASN][1000 genomes]
rs12209948	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12213653	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4236121	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4236122	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4289638	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4438959	0.83[AMR][1000 genomes]
rs4518493	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4712089	0.80[ASN][1000 genomes]
rs4712090	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4715516	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56217917	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56776090	0.80[ASN][1000 genomes]
rs62416378	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62416416	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72975482	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72978512	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55005400-55009600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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