Variant report

Variant	rs12200155
Chromosome Location	chr6:133393676-133393677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10457602	0.90[CEU][hapmap]
rs10457603	0.90[CEU][hapmap]
rs12193038	0.81[CEU][hapmap]
rs12193158	0.81[CEU][hapmap]
rs12201315	0.90[CEU][hapmap]
rs12206438	0.85[CEU][hapmap]
rs28538690	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3756869	0.81[CEU][hapmap]
rs4077767	0.96[ASN][1000 genomes]
rs4077768	0.96[ASN][1000 genomes]
rs4273707	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4273708	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62430562	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62430588	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62430590	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6569863	0.83[CHB][hapmap]
rs6927627	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6935070	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6935480	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6936410	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6937029	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6939899	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6940959	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7738156	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7750279	0.90[CEU][hapmap]
rs7750376	0.94[CEU][hapmap]
rs7754486	0.90[CEU][hapmap]
rs7756171	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321388	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9321389	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9483529	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483530	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9483535	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9493513	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9493514	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9493515	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493517	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9493518	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs975225	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3445931	chr6:133347824-133434532	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133393600-133394400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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