Variant report

Variant	rs12203572
Chromosome Location	chr6:81067717-81067718
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10455370	0.82[EUR][1000 genomes]
rs10755395	0.83[ASN][1000 genomes]
rs10943704	0.83[ASN][1000 genomes]
rs12209683	0.80[ASN][1000 genomes]
rs1572941	0.83[ASN][1000 genomes]
rs1984242	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2223873	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2223875	0.81[EUR][1000 genomes]
rs2322753	0.82[EUR][1000 genomes]
rs2322765	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805859	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805869	0.82[EUR][1000 genomes]
rs4706840	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4706841	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6906078	0.80[ASN][1000 genomes]
rs6906638	0.80[ASN][1000 genomes]
rs6907135	0.80[ASN][1000 genomes]
rs6929517	0.80[ASN][1000 genomes]
rs7762895	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9343986	0.80[ASN][1000 genomes]
rs9350851	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9350854	0.83[ASN][1000 genomes]
rs9352826	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9361608	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81029400-81079600	Weak transcription	HSMM	muscle
2	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
3	chr6:81050400-81071200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:81053600-81073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:81058400-81071400	Weak transcription	Aorta	Aorta
6	chr6:81058400-81075800	Weak transcription	Psoas Muscle	Psoas
7	chr6:81059200-81069000	Weak transcription	Fetal Stomach	stomach
8	chr6:81060600-81069000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:81063000-81070400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:81063800-81068800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:81064000-81069000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:81064600-81068800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:81065200-81072800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:81066000-81071000	Weak transcription	Brain Anterior Caudate	brain
15	chr6:81067000-81067800	Enhancers	NHDF-Ad	bronchial
16	chr6:81067000-81068200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:81067200-81067800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:81067200-81068600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:81067400-81067800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:81067600-81069000	Weak transcription	Pancreas	Pancrea
21	chr6:81067600-81069200	Weak transcription	Liver	Liver
22	chr6:81067600-81075800	Weak transcription	Ovary	ovary

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