Variant report

Variant	rs12204035
Chromosome Location	chr6:11978741-11978742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11930485..11933038-chr6:11977448..11980283,2	K562	blood:
2	chr6:11972074..11974457-chr6:11977774..11979733,2	K562	blood:
3	chr6:11974666..11976581-chr6:11977249..11978780,2	K562	blood:
4	chr6:11977584..11980181-chr6:12074107..12077216,3	K562	blood:
5	chr6:11967100..11968723-chr6:11978627..11980461,2	K562	blood:
6	chr6:11972074..11974829-chr6:11976477..11980187,3	K562	blood:
7	chr6:11978165..11980231-chr6:12009149..12013018,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10456088	0.83[ASN][1000 genomes]
rs12189667	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12190182	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12190917	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12191113	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12192522	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12198183	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12199764	0.80[ASN][1000 genomes]
rs12202320	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12202388	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12202981	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12205721	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12207789	0.89[CHB][hapmap]
rs12208282	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12209572	0.89[CHB][hapmap];0.96[CHD][hapmap];1.00[TSI][hapmap]
rs12210876	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12211163	0.92[CHD][hapmap];1.00[TSI][hapmap]
rs12212747	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12213062	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12213771	0.93[ASN][1000 genomes]
rs12216165	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28888496	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57671359	0.80[ASN][1000 genomes]
rs58002962	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60027663	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60683973	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6939106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs9394370	1.00[TSI][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11973200-11980200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11975800-11979200	Enhancers	K562	blood
3	chr6:11978200-11979600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:11978400-11978800	Enhancers	Primary T cells from cord blood	blood
5	chr6:11978400-11979000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:11978400-11979000	Enhancers	GM12878-XiMat	blood
7	chr6:11978400-11979000	Enhancers	Hela-S3	cervix
8	chr6:11978400-11979200	Enhancers	Fetal Intestine Large	intestine
9	chr6:11978400-11979200	Enhancers	HUVEC	blood vessel
10	chr6:11978400-11979400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:11978600-11978800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:11978600-11978800	Enhancers	Fetal Thymus	thymus
13	chr6:11978600-11978800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:11978600-11979000	Enhancers	Primary B cells from cord blood	blood
15	chr6:11978600-11979000	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr6:11978600-11979000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:11978600-11979000	Enhancers	Fetal Kidney	kidney
18	chr6:11978600-11979000	Enhancers	Stomach Mucosa	stomach
19	chr6:11978600-11979200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr6:11978600-11979200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:11978600-11979200	Enhancers	Fetal Intestine Small	intestine
22	chr6:11978600-11979200	Enhancers	NH-A	brain
23	chr6:11978600-11979400	Enhancers	Primary hematopoietic stem cells	blood

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