Variant report

Variant	rs12205095
Chromosome Location	chr6:133037306-133037307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2294759	0.81[GIH][hapmap]
rs3756974	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12205095	VNN2	cis	multi-tissue	Pritchard
rs12205095	VNN2	Cis_1M	lymphoblastoid	RTeQTL
rs12205095	VNN3	cis	multi-tissue	Pritchard
rs12205095	VNN3	cis	Whole Blood	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133034800-133053200	Weak transcription	Placenta	Placenta
2	chr6:133035200-133038600	Weak transcription	Stomach Mucosa	stomach
3	chr6:133035400-133044200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:133035600-133037400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr6:133035600-133037600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:133035600-133037600	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr6:133035600-133038000	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:133035600-133038200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:133035600-133040400	Weak transcription	Fetal Intestine Large	intestine
10	chr6:133035600-133040400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:133035600-133041200	Enhancers	Liver	Liver
12	chr6:133035800-133037600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:133037200-133038000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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