Variant report

Variant	rs12209054
Chromosome Location	chr6:56164098-56164099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56157878..56160629-chr6:56163025..56165524,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10456731	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12195053	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12209474	1.00[ASN][1000 genomes]
rs12213867	1.00[ASN][1000 genomes]
rs3846930	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3996938	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4361616	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4398743	0.80[ASN][1000 genomes]
rs4427001	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4521578	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715600	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4715601	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4715605	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57818602	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911260	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6940268	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs724677	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72870218	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7746772	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9296836	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9382607	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9464373	1.00[ASN][1000 genomes]
rs9464374	1.00[ASN][1000 genomes]
rs9475653	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9475656	1.00[ASN][1000 genomes]
rs9475657	1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56162200-56165600	Enhancers	HUVEC	blood vessel
2	chr6:56164000-56167000	Weak transcription	Rectal Smooth Muscle	rectum

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