Variant report

Variant	rs12212937
Chromosome Location	chr6:65969675-65969676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10455574	1.00[JPT][hapmap]
rs12189991	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12193376	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12193781	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12197071	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12200475	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12203568	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12205180	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12207416	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210382	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12211960	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12213645	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1295291	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1570212	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496685	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1813358	0.89[ASN][1000 genomes]
rs28517860	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4559078	0.89[ASN][1000 genomes]
rs543036	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655545	0.89[ASN][1000 genomes]
rs6917823	0.89[ASN][1000 genomes]
rs73439499	0.89[ASN][1000 genomes]
rs9445477	0.89[ASN][1000 genomes]
rs9445478	0.89[ASN][1000 genomes]
rs9453207	0.89[ASN][1000 genomes]
rs9453211	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930945	chr6:65814264-66045031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv933353	chr6:65814264-66045031	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886010	chr6:65873577-65989292	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv2752619	chr6:65917536-66062893	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv886013	chr6:65918809-66050797	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv521670	chr6:65921933-66009103	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1026975	chr6:65927058-65979662	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv516417	chr6:65952526-66083780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv969483	chr6:65964257-65990271	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv470823	chr6:65969239-66052674	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65969000-65969800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:65969200-65970600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:65969400-65970400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:65969400-65970800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:65969600-65969800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:65969600-65970400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:65969600-65971000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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