Variant report

Variant	rs12213507
Chromosome Location	chr6:132944592-132944593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10872394	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11961682	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11962787	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11966589	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2300077	0.81[MEX][hapmap]
rs4256456	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4418213	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4537168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4543395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6939470	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs7739700	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9385618	0.84[CEU][hapmap]
rs9385619	0.82[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.91[ASN][1000 genomes]
rs9389016	0.82[EUR][1000 genomes]
rs9402439	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12213507	VNN1	cis	multi-tissue	Pritchard
rs12213507	VNN1	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132943400-132944600	Weak transcription	Fetal Kidney	kidney
2	chr6:132944400-132945400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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