Variant report

Variant	rs12213804
Chromosome Location	chr6:74809504-74809505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10485388	0.82[EUR][1000 genomes]
rs11751061	0.83[EUR][1000 genomes]
rs11751175	0.83[EUR][1000 genomes]
rs11756254	0.83[EUR][1000 genomes]
rs12190509	0.83[EUR][1000 genomes]
rs12191462	0.83[EUR][1000 genomes]
rs12191866	0.83[EUR][1000 genomes]
rs12202104	0.81[EUR][1000 genomes]
rs12205582	0.83[EUR][1000 genomes]
rs12205749	0.83[EUR][1000 genomes]
rs12206043	0.83[EUR][1000 genomes]
rs12209564	0.81[EUR][1000 genomes]
rs12209571	0.82[EUR][1000 genomes]
rs12213297	0.81[EUR][1000 genomes]
rs12215639	0.83[EUR][1000 genomes]
rs3923228	0.81[EUR][1000 genomes]
rs4279395	0.80[ASN][1000 genomes]
rs4546447	0.82[EUR][1000 genomes]
rs4644011	0.83[EUR][1000 genomes]
rs55789428	0.83[EUR][1000 genomes]
rs56104278	0.83[EUR][1000 genomes]
rs56138029	0.83[EUR][1000 genomes]
rs56362119	0.83[EUR][1000 genomes]
rs56396434	0.83[EUR][1000 genomes]
rs6453722	0.86[ASN][1000 genomes]
rs66472340	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66865230	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6899867	0.86[ASN][1000 genomes]
rs72952371	0.83[EUR][1000 genomes]
rs72952395	0.80[EUR][1000 genomes]
rs72952398	0.81[EUR][1000 genomes]
rs72955171	0.83[EUR][1000 genomes]
rs72955173	0.83[EUR][1000 genomes]
rs72955185	0.83[EUR][1000 genomes]
rs72955196	0.83[EUR][1000 genomes]
rs72955199	0.83[EUR][1000 genomes]
rs72955201	0.81[EUR][1000 genomes]
rs7749598	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030389	chr6:74606701-74811706	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74805400-74810600	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links