Variant report

Variant	rs12215217
Chromosome Location	chr6:133457828-133457829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10457002	0.82[EUR][1000 genomes]
rs10457600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10457602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10457603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11154715	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12154207	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12190728	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12191026	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12192002	0.87[EUR][1000 genomes]
rs12192605	0.87[EUR][1000 genomes]
rs12196069	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12196492	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12199138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199555	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12199738	0.87[EUR][1000 genomes]
rs12199958	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12200393	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12201315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12205139	0.83[EUR][1000 genomes]
rs12206291	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206438	0.81[CEU][hapmap]
rs12210216	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12211999	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12212715	0.82[EUR][1000 genomes]
rs12213350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213690	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1856291	0.83[EUR][1000 genomes]
rs28538690	0.81[EUR][1000 genomes]
rs4273707	0.83[EUR][1000 genomes]
rs4273708	0.83[EUR][1000 genomes]
rs57161827	0.87[EUR][1000 genomes]
rs58835706	0.82[EUR][1000 genomes]
rs59793266	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62428563	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62428596	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62428597	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62430582	0.82[EUR][1000 genomes]
rs62430588	0.83[EUR][1000 genomes]
rs62430590	0.83[EUR][1000 genomes]
rs6569863	0.81[CEU][hapmap]
rs6902225	0.90[EUR][1000 genomes]
rs6911954	0.82[EUR][1000 genomes]
rs6913444	0.96[EUR][1000 genomes]
rs6927627	0.83[EUR][1000 genomes]
rs6935070	0.83[EUR][1000 genomes]
rs6935480	0.83[EUR][1000 genomes]
rs6936410	0.83[EUR][1000 genomes]
rs6937029	0.82[EUR][1000 genomes]
rs6940959	0.83[EUR][1000 genomes]
rs72557636	0.84[EUR][1000 genomes]
rs7738156	0.83[EUR][1000 genomes]
rs7738592	0.86[EUR][1000 genomes]
rs7746390	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7748926	0.96[EUR][1000 genomes]
rs7749533	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7750218	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7750376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7754486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7756171	0.95[CEU][hapmap]
rs7756963	0.96[EUR][1000 genomes]
rs7761372	0.87[EUR][1000 genomes]
rs7766470	0.87[EUR][1000 genomes]
rs7767378	0.85[EUR][1000 genomes]
rs7767651	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7770031	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773069	0.88[EUR][1000 genomes]
rs9483529	0.83[EUR][1000 genomes]
rs9483530	0.83[EUR][1000 genomes]
rs9483554	0.94[EUR][1000 genomes]
rs9483557	0.88[EUR][1000 genomes]
rs9493513	0.80[EUR][1000 genomes]
rs9493515	0.83[EUR][1000 genomes]
rs9493517	0.83[EUR][1000 genomes]
rs9493518	0.83[EUR][1000 genomes]
rs9493540	0.84[EUR][1000 genomes]
rs9493544	0.85[EUR][1000 genomes]
rs957183	0.97[EUR][1000 genomes]
rs975225	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133457200-133458000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:133457200-133459200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:133457400-133458200	Enhancers	Brain Substantia Nigra	brain
4	chr6:133457600-133458000	Enhancers	Brain Angular Gyrus	brain
5	chr6:133457600-133458000	Enhancers	Brain Cingulate Gyrus	brain
6	chr6:133457600-133458000	Enhancers	Brain Germinal Matrix	brain
7	chr6:133457600-133458000	Enhancers	Fetal Brain Male	brain
8	chr6:133457600-133458800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links