Variant report

Variant	rs12215483
Chromosome Location	chr6:150524592-150524593
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150523335..150526077-chr6:150588121..150590622,2	MCF-7	breast:
2	chr6:150518298..150521152-chr6:150523437..150526060,2	K562	blood:
3	chr6:150520781..150525407-chr6:150526478..150529331,4	K562	blood:
4	chr6:150521985..150525407-chr6:150525748..150528930,3	K562	blood:
5	chr6:150514870..150517111-chr6:150523756..150525398,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11155709	0.89[CHB][hapmap]
rs11155710	0.86[CHB][hapmap]
rs11755697	0.89[CHB][hapmap]
rs17079397	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150518200-150530800	Enhancers	Fetal Heart	heart
3	chr6:150519800-150524800	Enhancers	Fetal Intestine Large	intestine
4	chr6:150520200-150525200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:150521600-150526600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150523000-150524800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150523000-150524800	Enhancers	NHEK	skin
8	chr6:150523200-150525200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150523200-150525200	Enhancers	HMEC	breast
10	chr6:150523200-150525400	Enhancers	Esophagus	oesophagus
11	chr6:150523200-150526600	Enhancers	Left Ventricle	heart
12	chr6:150523200-150526600	Enhancers	Right Ventricle	heart
13	chr6:150523400-150524800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr6:150523400-150524800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:150523400-150525000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:150523400-150525000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr6:150523600-150524800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:150523600-150525400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:150523600-150526000	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:150523600-150526600	Weak transcription	Pancreas	Pancrea
21	chr6:150523800-150524600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr6:150523800-150524800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:150523800-150525000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr6:150523800-150525800	Weak transcription	Lung	lung
25	chr6:150523800-150526200	Weak transcription	Small Intestine	intestine
26	chr6:150524000-150525400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:150524000-150525400	Enhancers	Right Atrium	heart
28	chr6:150524000-150526200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:150524000-150532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:150524200-150525000	Enhancers	Fetal Muscle Leg	muscle
31	chr6:150524200-150525600	Weak transcription	K562	blood
32	chr6:150524200-150526200	Weak transcription	Placenta	Placenta
33	chr6:150524200-150526600	Enhancers	Psoas Muscle	Psoas
34	chr6:150524400-150525400	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr6:150524400-150525800	Weak transcription	Colonic Mucosa	Colon
36	chr6:150524400-150526400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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