Variant report

Variant	rs12216165
Chromosome Location	chr6:12060531-12060532
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11823569..11825250-chr6:12058642..12061555,2	K562	blood:
2	chr6:12059643..12061905-chr6:12063109..12065136,2	K562	blood:
3	chr6:12054396..12056501-chr6:12059017..12060570,2	MCF-7	breast:
4	chr6:12060238..12063083-chr6:12063188..12065136,3	K562	blood:

rs_ID	r²[population]
rs12189667	1.00[EUR][1000 genomes]
rs12190182	1.00[EUR][1000 genomes]
rs12190917	1.00[EUR][1000 genomes]
rs12191113	1.00[EUR][1000 genomes]
rs12192522	1.00[EUR][1000 genomes]
rs12198183	1.00[EUR][1000 genomes]
rs12202320	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12202388	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12202981	1.00[EUR][1000 genomes]
rs12204035	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12205721	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12208282	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12210876	1.00[EUR][1000 genomes]
rs12212747	1.00[EUR][1000 genomes]
rs12213062	1.00[EUR][1000 genomes]
rs28489887	1.00[EUR][1000 genomes]
rs28888496	1.00[EUR][1000 genomes]
rs58002962	1.00[EUR][1000 genomes]
rs60027663	1.00[EUR][1000 genomes]
rs60683973	1.00[EUR][1000 genomes]
rs60765903	1.00[EUR][1000 genomes]
rs6939106	1.00[CEU][hapmap]

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12034800-12061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:12040200-12060800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:12041000-12060800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:12045600-12061000	Weak transcription	Fetal Thymus	thymus
5	chr6:12045600-12061000	Weak transcription	Pancreas	Pancrea
6	chr6:12045600-12061200	Weak transcription	Gastric	stomach
7	chr6:12045600-12065800	Weak transcription	Aorta	Aorta
8	chr6:12045600-12066200	Weak transcription	HSMM	muscle
9	chr6:12045600-12066400	Weak transcription	Hela-S3	cervix
10	chr6:12045800-12066000	Weak transcription	HUVEC	blood vessel
11	chr6:12046000-12060800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:12048000-12060800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:12048000-12061200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:12048200-12060800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:12048200-12062800	Weak transcription	K562	blood
16	chr6:12048600-12060800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:12048600-12060800	Weak transcription	Fetal Intestine Large	intestine
18	chr6:12048600-12061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr6:12048600-12061200	Weak transcription	Fetal Stomach	stomach
20	chr6:12050600-12065800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:12050600-12066000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:12051200-12061000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:12051200-12061000	Weak transcription	Lung	lung
24	chr6:12052600-12060800	Weak transcription	Thymus	Thymus
25	chr6:12052600-12061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:12053000-12060800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:12053400-12060800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:12054000-12060800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:12054000-12061000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:12054200-12060600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:12055400-12061000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:12056200-12061200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:12056400-12060800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:12057000-12060800	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:12058200-12060600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:12058200-12060800	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:12058200-12060800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr6:12058400-12060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:12058600-12060800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr6:12058600-12060800	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr6:12058600-12061600	Enhancers	Fetal Heart	heart
42	chr6:12058800-12060800	Weak transcription	Primary T cells from cord blood	blood
43	chr6:12058800-12060800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr6:12058800-12060800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:12058800-12061000	Weak transcription	NHLF	lung
46	chr6:12058800-12061200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:12059000-12060800	Weak transcription	Brain Angular Gyrus	brain
48	chr6:12059000-12061000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:12059000-12061000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:12059000-12061000	Weak transcription	Ovary	ovary

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