Variant report

Variant	rs12221280
Chromosome Location	chr10:25825994-25825995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10047266	0.84[JPT][hapmap]
rs10082439	0.80[EUR][1000 genomes]
rs10508699	0.84[JPT][hapmap]
rs10741093	0.82[JPT][hapmap]
rs11014598	0.80[JPT][hapmap]
rs1329252	0.84[JPT][hapmap]
rs1335208	0.85[JPT][hapmap]
rs1335209	0.85[JPT][hapmap]
rs35650576	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3923088	0.85[JPT][hapmap]
rs4474349	0.90[JPT][hapmap]
rs7077800	0.85[JPT][hapmap]
rs7086249	0.84[JPT][hapmap]
rs7090998	0.81[EUR][1000 genomes]
rs7091908	0.81[EUR][1000 genomes]
rs7100942	0.84[JPT][hapmap]
rs983090	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9919420	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv947772	chr10:25825612-25827973	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25820000-25836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:25825000-25826000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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