Variant report

Variant	rs12221325
Chromosome Location	chr10:119050998-119050999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10082463	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10082478	0.86[AMR][1000 genomes]
rs10082507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787767	0.86[AMR][1000 genomes]
rs10787768	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10787769	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10787772	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10886058	0.86[AMR][1000 genomes]
rs10886069	0.86[EUR][1000 genomes]
rs11197938	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197957	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197961	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197983	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11197985	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12243925	0.88[EUR][1000 genomes]
rs12249877	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12250377	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12260782	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12265713	0.86[AMR][1000 genomes]
rs12572369	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12573252	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17096103	0.83[AMR][1000 genomes]
rs2255321	0.85[AMR][1000 genomes]
rs2283142	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532808	0.81[ASN][1000 genomes]
rs363238	0.86[AMR][1000 genomes]
rs363256	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs363262	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs363279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs363296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4751621	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4751622	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752048	0.86[AMR][1000 genomes]
rs4752051	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752052	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752055	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7090219	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72825515	0.86[AMR][1000 genomes]
rs72825561	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12221325	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119032400-119051000	Weak transcription	Ovary	ovary
2	chr10:119032600-119063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:119035400-119058000	Weak transcription	Small Intestine	intestine
4	chr10:119041200-119051000	Weak transcription	Right Ventricle	heart
5	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr10:119041800-119071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:119042000-119053200	Weak transcription	Colonic Mucosa	Colon
8	chr10:119042200-119064200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:119042800-119051400	Weak transcription	Brain Germinal Matrix	brain
10	chr10:119043000-119069400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr10:119043400-119056800	Weak transcription	Brain Substantia Nigra	brain
13	chr10:119043400-119065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:119044600-119051200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:119044600-119051400	Weak transcription	Esophagus	oesophagus
16	chr10:119044600-119060000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:119044800-119051600	Weak transcription	Spleen	Spleen
18	chr10:119044800-119051600	Weak transcription	Hela-S3	cervix
19	chr10:119044800-119077200	Weak transcription	NHDF-Ad	bronchial
20	chr10:119045000-119052000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:119045000-119053200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:119045000-119057000	Weak transcription	Fetal Lung	lung
23	chr10:119045000-119058200	Weak transcription	Fetal Intestine Small	intestine
24	chr10:119045000-119063200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:119045000-119063200	Weak transcription	Fetal Stomach	stomach
26	chr10:119045000-119070800	Weak transcription	Gastric	stomach
27	chr10:119045000-119081800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:119045400-119051600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr10:119045400-119053200	Weak transcription	Brain Anterior Caudate	brain
30	chr10:119045400-119055600	Weak transcription	Brain Hippocampus Middle	brain
31	chr10:119045400-119071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:119045600-119061200	Weak transcription	Fetal Kidney	kidney
33	chr10:119045600-119078600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:119046200-119051600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr10:119046400-119059600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:119046600-119064200	Weak transcription	HMEC	breast
37	chr10:119049000-119056000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr10:119049200-119051000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:119049200-119051000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr10:119049200-119051000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr10:119049200-119058400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:119049200-119070800	Weak transcription	NH-A	brain
43	chr10:119049400-119051000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:119049400-119051000	Weak transcription	Colon Smooth Muscle	Colon
45	chr10:119049400-119051200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr10:119049400-119051600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:119049400-119052000	Weak transcription	Adipose Nuclei	Adipose
48	chr10:119049400-119052200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr10:119049400-119055800	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:119049400-119058200	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links