Variant report

Variant	rs12221479
Chromosome Location	chr10:50795210-50795211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50795041..50796661-chr10:50797762..50799638,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10776582	0.94[ASN][1000 genomes]
rs10857507	0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs10857508	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857509	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11101159	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101164	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11101165	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11101166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11101175	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11527800	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242851	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12412526	0.81[EUR][1000 genomes]
rs12570332	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1917801	0.89[AMR][1000 genomes]
rs1917802	0.89[AMR][1000 genomes]
rs1917817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1949883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1949884	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs2103202	0.86[ASN][1000 genomes]
rs2177820	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750746	0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs3750751	1.00[CEU][hapmap]
rs4240510	0.81[EUR][1000 genomes]
rs4253023	0.89[AMR][1000 genomes]
rs4253079	0.81[EUR][1000 genomes]
rs4253231	1.00[CEU][hapmap]
rs4453140	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs4838522	0.81[EUR][1000 genomes]
rs4838527	0.89[AMR][1000 genomes]
rs4838529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6537539	0.87[ASN][1000 genomes]
rs7078115	0.94[ASN][1000 genomes]
rs7080837	0.94[ASN][1000 genomes]
rs7081904	0.94[ASN][1000 genomes]
rs7095259	0.94[ASN][1000 genomes]
rs7098129	0.85[ASN][1000 genomes]
rs72795703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50793600-50795600	Weak transcription	HMEC	breast
2	chr10:50794200-50797400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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