Variant report

Variant	rs12221875
Chromosome Location	chr11:59834298-59834299
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10897003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10897006	0.95[JPT][hapmap]
rs11821744	0.87[AMR][1000 genomes]
rs11824940	0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs11825794	0.80[AMR][1000 genomes]
rs12225069	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12805696	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12806720	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17154511	0.95[JPT][hapmap];0.87[AMR][1000 genomes]
rs17154527	0.83[AMR][1000 genomes]
rs2298584	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990704	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35691621	0.82[AMR][1000 genomes]
rs57170676	0.82[AMR][1000 genomes]
rs7102260	0.95[JPT][hapmap];0.83[AMR][1000 genomes]
rs7106518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7108307	0.95[JPT][hapmap];0.83[AMR][1000 genomes]
rs7109174	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59832400-59836600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:59832400-59837800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:59832600-59836600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:59832600-59844800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:59833000-59836200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:59833600-59835400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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