Variant report

Variant	rs12223072
Chromosome Location	chr11:47059275-47059276
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:68 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv312	chr11:47047247-47072397	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv33095	chr11:47054281-47064767	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3403717	chr11:47055876-47060874	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3507746	chr11:47056426-47060174	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3517629	chr11:47056901-47064924	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv998583	chr11:47057087-47065609	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
11	nsv512222	chr11:47057334-47064381	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3374556	chr11:47057401-47060249	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3517631	chr11:47057438-47063913	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv3460863	chr11:47057453-47063821	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3517634	chr11:47057480-47063812	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3517635	chr11:47057490-47063837	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv3460841	chr11:47057509-47063786	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv3460829	chr11:47057509-47063788	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv3517633	chr11:47057516-47063846	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3460852	chr11:47057521-47063753	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv3517632	chr11:47057541-47063773	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
22	esv4508	chr11:47057556-47063909	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
23	nsv498753	chr11:47057588-47063704	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv3460874	chr11:47057589-47063712	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv3517636	chr11:47057589-47063712	ZNF genes & repeats Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv20339	chr11:47057887-47063447	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	nsv821175	chr11:47057887-47063447	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
28	nsv825868	chr11:47057887-47063629	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
29	esv1796245	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
30	esv1797892	chr11:47057925-47063355	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
31	esv1799008	chr11:47057925-47063355	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
32	esv1800181	chr11:47057925-47063355	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
33	esv1800881	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
34	esv1803286	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
35	esv1803552	chr11:47057925-47063355	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
36	esv1818187	chr11:47057925-47063355	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
37	esv1822429	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
38	esv1834269	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
39	esv1836056	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	esv1838546	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
41	esv1839381	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
42	esv1841359	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
43	esv1843204	chr11:47057925-47063355	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
44	esv1847643	chr11:47057925-47063355	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
45	esv1848138	chr11:47057925-47063355	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
46	esv1848867	chr11:47057925-47063355	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
47	esv1849079	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
48	esv1850298	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
49	esv1850920	chr11:47057925-47063355	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
50	nsv820057	chr11:47058070-47063890	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:47055200-47062000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:47056400-47073600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:47056600-47073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:47057200-47074200	Weak transcription	Hela-S3	cervix
9	chr11:47058600-47074800	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links