Variant report

Variant	rs12223413
Chromosome Location	chr11:47063601-47063602
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:47063584-47063778	K562	blood:	n/a	n/a
2	CEBPB	chr11:47063595-47063754	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000271350	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9300055	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv312	chr11:47047247-47072397	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv33095	chr11:47054281-47064767	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3517629	chr11:47056901-47064924	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv998583	chr11:47057087-47065609	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv512222	chr11:47057334-47064381	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv3517631	chr11:47057438-47063913	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv3460863	chr11:47057453-47063821	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3517634	chr11:47057480-47063812	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3517635	chr11:47057490-47063837	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3460841	chr11:47057509-47063786	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv3460829	chr11:47057509-47063788	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3517633	chr11:47057516-47063846	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3460852	chr11:47057521-47063753	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv3517632	chr11:47057541-47063773	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv4508	chr11:47057556-47063909	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
19	nsv498753	chr11:47057588-47063704	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3460874	chr11:47057589-47063712	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv3517636	chr11:47057589-47063712	ZNF genes & repeats Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv825868	chr11:47057887-47063629	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
23	nsv820057	chr11:47058070-47063890	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv3520990	chr11:47059076-47063913	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv3520989	chr11:47059076-47064874	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv3454130	chr11:47059476-47065574	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
27	esv3454119	chr11:47060401-47064749	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
28	esv3454141	chr11:47060401-47064749	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
29	nsv554206	chr11:47061100-47071897	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
30	esv990426	chr11:47061629-47063629	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
31	nsv825869	chr11:47061629-47063629	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12223413	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:47056400-47073600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:47056600-47073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:47057200-47074200	Weak transcription	Hela-S3	cervix
8	chr11:47058600-47074800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:47061400-47082800	Weak transcription	Brain Angular Gyrus	brain

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