Variant report

Variant	rs12223637
Chromosome Location	chr11:76104519-76104520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11236740	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12221507	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12223763	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12225661	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12420155	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12420744	0.91[ASN][1000 genomes]
rs2017759	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156708	0.81[EUR][1000 genomes]
rs6592632	0.81[ASW][hapmap];0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7113820	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927830	0.81[EUR][1000 genomes]
rs867247	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs867248	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12223637	RP11-111M22.2	cis	Thyroid	GTEx
rs12223637	SNORD15B	cis	cerebellum	SCAN
rs12223637	PDE2A	cis	cerebellum	SCAN
rs12223637	C2CD3	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
2	chr11:76093600-76110000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:76094200-76104800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:76094600-76104600	Weak transcription	Lung	lung
5	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
6	chr11:76100400-76109000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:76101400-76104800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:76101800-76104800	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:76102000-76104600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:76103200-76104800	Enhancers	Fetal Lung	lung
11	chr11:76103200-76105600	Weak transcription	Pancreas	Pancrea
12	chr11:76103400-76104800	Enhancers	Primary B cells from cord blood	blood
13	chr11:76103600-76104600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:76103800-76104600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:76104000-76104600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr11:76104200-76104600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:76104400-76104600	Enhancers	Gastric	stomach
18	chr11:76104400-76104600	Enhancers	Right Atrium	heart
19	chr11:76104400-76104600	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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