Variant report

Variant	rs12225155
Chromosome Location	chr11:56980839-56980840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10501363	0.81[CEU][hapmap];0.93[JPT][hapmap]
rs10896573	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10896577	0.82[ASN][1000 genomes]
rs10896582	0.86[ASN][1000 genomes]
rs10896587	0.92[ASN][1000 genomes]
rs10896588	0.92[ASN][1000 genomes]
rs10896593	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11228937	0.86[JPT][hapmap]
rs11228941	0.86[ASN][1000 genomes]
rs11228944	0.86[ASN][1000 genomes]
rs11228955	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1124847	0.96[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs1941035	0.84[EUR][1000 genomes]
rs1943479	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1943486	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1943489	0.96[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs1943491	0.84[EUR][1000 genomes]
rs2077189	0.96[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs2903267	0.96[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs3017571	0.85[EUR][1000 genomes]
rs3017574	0.86[EUR][1000 genomes]
rs3017575	0.96[CEU][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs3758922	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4939111	0.92[EUR][1000 genomes]
rs716745	0.81[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs721608	0.86[ASN][1000 genomes]
rs948850	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56974000-56981000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:56975200-56981000	Weak transcription	Right Atrium	heart
3	chr11:56977000-56983000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:56977400-56981200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:56977400-56981200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:56978800-56981000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:56978800-56981000	Weak transcription	Left Ventricle	heart
8	chr11:56978800-56981200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:56979000-56984400	Weak transcription	Spleen	Spleen
10	chr11:56979200-56981000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:56979600-56984000	Enhancers	Fetal Brain Male	brain
12	chr11:56979800-56982200	Enhancers	Fetal Lung	lung
13	chr11:56980000-56981400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:56980200-56982200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:56980200-56982600	Enhancers	Fetal Stomach	stomach
16	chr11:56980400-56981600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:56980400-56982200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:56980400-56982400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:56980400-56982600	Enhancers	Fetal Muscle Leg	muscle
20	chr11:56980600-56981000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:56980600-56981000	Flanking Active TSS	Fetal Brain Female	brain
22	chr11:56980600-56981000	Enhancers	HUVEC	blood vessel
23	chr11:56980600-56981200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
24	chr11:56980600-56981200	Enhancers	HSMMtube	muscle
25	chr11:56980600-56981400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr11:56980600-56981400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr11:56980600-56981600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr11:56980600-56981600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr11:56980600-56981600	Enhancers	Primary hematopoietic stem cells	blood
30	chr11:56980600-56981800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr11:56980600-56982000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:56980600-56982000	Flanking Active TSS	Brain Germinal Matrix	brain
33	chr11:56980600-56982000	Enhancers	Lung	lung
34	chr11:56980600-56982000	Enhancers	Right Ventricle	heart
35	chr11:56980600-56982200	Enhancers	Brain Anterior Caudate	brain
36	chr11:56980600-56982600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:56980600-56982600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:56980600-56982600	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr11:56980600-56982600	Enhancers	NHDF-Ad	bronchial
40	chr11:56980600-56983200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:56980800-56981000	Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr11:56980800-56981000	Enhancers	Small Intestine	intestine
43	chr11:56980800-56981000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr11:56980800-56981200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
45	chr11:56980800-56981200	Active TSS	H9 Cell Line	embryonic stem cell
46	chr11:56980800-56981200	Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr11:56980800-56981200	Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr11:56980800-56981200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:56980800-56981200	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr11:56980800-56981200	Enhancers	Brain Cingulate Gyrus	brain

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