Variant report
| Variant | rs12227197 |
|---|---|
| Chromosome Location | chr12:10923911-10923912 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:10923421..10924942-chr12:11638999..11640209,11 | K562 | blood: | |
| 2 | chr12:10923542..10924154-chr12:11639667..11640247,2 | MCF-7 | breast: | |
| 3 | chr12:10923485..10924800-chr12:11352236..11353220,4 | MCF-7 | breast: | |
| 4 | chr10:44305858..44306365-chr12:10923506..10924325,2 | MCF-7 | breast: | |
| 5 | chr12:10923706..10924220-chr12:11352723..11353239,2 | K562 | blood: | |
| 6 | chr12:10923804..10924411-chr12:11352563..11353080,2 | MCF-7 | breast: | |
| 7 | chr12:10923458..10924277-chr12:11707052..11707592,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000255790 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1091308 | 0.91[EUR][1000 genomes] |
| rs11053946 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11053947 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11053962 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11053963 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11053965 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11053966 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11053974 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11053975 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12227186 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12227292 | 1.00[JPT][hapmap] |
| rs12228438 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12228453 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12228569 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12231169 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12231171 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2588355 | 0.91[EUR][1000 genomes] |
| rs33016 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs7139026 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049362 | chr12:10893573-11018850 | Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv898776 | chr12:10909412-11032045 | Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1044642 | chr12:10910774-10954384 | Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2753966 | chr12:10913111-10926489 | ZNF genes & repeats Bivalent Enhancer Enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv2755373 | chr12:10913111-10926489 | ZNF genes & repeats Enhancers Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | esv2755955 | chr12:10913111-10926489 | Bivalent Enhancer Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
