Variant report

Variant	rs12228903
Chromosome Location	chr12:116796936-116796937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:116795827..116800333-chr12:116800677..116806622,10	K562	blood:
2	chr12:116794823..116797570-chr12:116823877..116825448,2	K562	blood:
3	chr12:116728521..116730114-chr12:116796783..116799180,2	MCF-7	breast:
4	chr12:116795827..116800092-chr12:116804104..116806622,3	K562	blood:
5	chr12:116713317..116716868-chr12:116795567..116799034,4	MCF-7	breast:
6	chr12:116796080..116800323-chr12:116810263..116814376,4	K562	blood:
7	chr12:116789705..116791776-chr12:116795463..116797457,2	K562	blood:
8	chr12:116712861..116715837-chr12:116795906..116798539,2	K562	blood:
9	chr12:116796063..116798440-chr12:116800677..116803897,4	K562	blood:
10	chr12:116782797..116785324-chr12:116796458..116799229,3	K562	blood:
11	chr12:116714337..116716286-chr12:116794773..116798539,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000123066	Chromatin interaction
ENSG00000258346	Chromatin interaction

rs_ID	r²[population]
rs11068003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11068006	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs11068007	0.81[CHB][hapmap]
rs12230486	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12371905	0.83[ASN][1000 genomes]
rs57615867	0.81[ASN][1000 genomes]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116795200-116800000	Enhancers	Fetal Muscle Trunk	muscle
2	chr12:116795400-116797000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr12:116795400-116800000	Enhancers	Fetal Muscle Leg	muscle
4	chr12:116795600-116797400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr12:116795600-116798800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:116795800-116798000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr12:116796000-116797800	Enhancers	Fetal Heart	heart
8	chr12:116796200-116797800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:116796200-116798000	Enhancers	Fetal Intestine Small	intestine
10	chr12:116796400-116797000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:116796400-116797000	Flanking Active TSS	A549	lung
12	chr12:116796400-116797200	Enhancers	Primary T cells from cord blood	blood
13	chr12:116796400-116797200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr12:116796400-116797200	Enhancers	Thymus	Thymus
15	chr12:116796400-116797400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr12:116796400-116797600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:116796400-116797600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:116796400-116797600	Enhancers	Colon Smooth Muscle	Colon
19	chr12:116796400-116797600	Flanking Active TSS	GM12878-XiMat	blood
20	chr12:116796400-116797800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr12:116796400-116797800	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr12:116796400-116798600	Enhancers	Fetal Intestine Large	intestine
23	chr12:116796400-116799600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr12:116796400-116799600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:116796600-116797000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
26	chr12:116796600-116797000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr12:116796600-116797000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
28	chr12:116796600-116797000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr12:116796600-116797000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr12:116796600-116797000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr12:116796600-116797000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr12:116796600-116797000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr12:116796600-116797000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr12:116796600-116797000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr12:116796600-116797000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:116796600-116797000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr12:116796600-116797000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr12:116796600-116797000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr12:116796600-116797000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:116796600-116797000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:116796600-116797000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:116796600-116797000	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr12:116796600-116797000	Flanking Active TSS	Liver	Liver
44	chr12:116796600-116797000	Enhancers	Brain Angular Gyrus	brain
45	chr12:116796600-116797000	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr12:116796600-116797000	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr12:116796600-116797000	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr12:116796600-116797000	Flanking Active TSS	Duodenum Mucosa	Duodenum
49	chr12:116796600-116797000	Enhancers	Esophagus	oesophagus
50	chr12:116796600-116797000	Flanking Active TSS	Fetal Brain Male	brain

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