Variant report

Variant	rs12229160
Chromosome Location	chr12:39869074-39869075
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:39838865..39841148-chr12:39868533..39871402,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10877173	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10877201	0.82[JPT][hapmap]
rs11172144	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11172162	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11172366	0.97[EUR][1000 genomes]
rs11172616	0.97[EUR][1000 genomes]
rs11172645	0.97[EUR][1000 genomes]
rs11172647	0.97[EUR][1000 genomes]
rs11172687	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs11172692	0.97[EUR][1000 genomes]
rs11172697	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11172713	0.82[JPT][hapmap]
rs11172722	0.82[JPT][hapmap]
rs11172794	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11172848	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11172896	0.83[EUR][1000 genomes]
rs11172897	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs12227286	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12227668	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12228013	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12228617	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs12229370	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12230055	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1512941	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs17127070	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17127094	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs17127129	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17127138	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2271478	1.00[JPT][hapmap]
rs2292491	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs35790935	1.00[EUR][1000 genomes]
rs35858791	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4072006	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs4285917	0.99[EUR][1000 genomes]
rs4294600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4298947	0.93[EUR][1000 genomes]
rs4639970	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57847223	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58036566	0.97[EUR][1000 genomes]
rs61258856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6581228	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7133376	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs7133599	0.97[EUR][1000 genomes]
rs7294474	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7302302	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7308138	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs73088816	0.97[EUR][1000 genomes]
rs7309234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73094447	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73094449	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73094488	1.00[EUR][1000 genomes]
rs7310178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs7310871	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7312611	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs73268359	0.83[EUR][1000 genomes]
rs74086536	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7966841	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7970944	0.97[EUR][1000 genomes]
rs7976275	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs7980595	1.00[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1044049	chr12:39845078-39922808	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1051709	chr12:39846990-39899051	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39869000-39869400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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