Variant report
| Variant | rs1223050 |
|---|---|
| Chromosome Location | chr6:102410185-102410186 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:102408799..102411775-chr6:102415336..102416958,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10081049 | 1.00[CHB][hapmap] |
| rs1223051 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1335020 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs1335021 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1361448 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs1465170 | 1.00[CEU][hapmap] |
| rs17062729 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs17062738 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs2051445 | 1.00[CEU][hapmap] |
| rs6570994 | 1.00[CEU][hapmap] |
| rs6570995 | 1.00[CEU][hapmap] |
| rs6571002 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6905533 | 1.00[CEU][hapmap] |
| rs73500535 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73500539 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7449816 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7744537 | 1.00[CEU][hapmap] |
| rs7750981 | 1.00[CEU][hapmap] |
| rs7754135 | 1.00[CEU][hapmap] |
| rs7754590 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs7765399 | 1.00[CEU][hapmap] |
| rs7768392 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs9322627 | 1.00[CHB][hapmap] |
| rs946860 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886465 | chr6:102318339-102466397 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886466 | chr6:102327303-102432398 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv470850 | chr6:102343078-102595587 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv830744 | chr6:102369761-102566737 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
