Variant report

Variant	rs12231922
Chromosome Location	chr12:10866620-10866621
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:10864553-10867222	HepG2	liver:	n/a	n/a
2	POLR2A	chr12:10866156-10867254	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr12:10866219-10866718	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr12:10866084-10866624	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr12:10864886-10867198	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10854444..10857560-chr12:10863985..10866894,3	MCF-7	breast:

Variant related genes	Relation type
YBX3	TF binding region
ENSG00000060138	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10772356	0.86[YRI][hapmap]
rs10845205	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10845206	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10845207	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053902	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11053904	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11053909	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053911	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053917	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1108542	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11830560	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11830873	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11838144	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12423741	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12425492	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12581675	0.90[ASN][1000 genomes]
rs2083958	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4445727	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7136530	0.89[ASN][1000 genomes]
rs7138223	0.80[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044637	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044645	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7310690	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs7963875	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9668997	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10845800-10869400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:10846400-10868200	Strong transcription	HUVEC	blood vessel
3	chr12:10847800-10868200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr12:10847800-10868800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:10848000-10868200	Weak transcription	Stomach Mucosa	stomach
6	chr12:10848000-10868600	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr12:10848400-10868400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:10848400-10869000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:10848600-10867800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:10848600-10868400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr12:10848600-10868800	Strong transcription	Osteobl	bone
12	chr12:10848600-10869000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:10848800-10868400	Strong transcription	Placenta	Placenta
14	chr12:10848800-10869000	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:10848800-10869200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:10848800-10869400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:10849000-10868400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:10849200-10869200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:10849200-10870000	Strong transcription	Liver	Liver
20	chr12:10849400-10867200	Strong transcription	Primary hematopoietic stem cells	blood
21	chr12:10849400-10869400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:10849600-10873600	Weak transcription	Brain Angular Gyrus	brain
23	chr12:10849800-10867400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr12:10849800-10867800	Strong transcription	Dnd41	blood
25	chr12:10849800-10868400	Strong transcription	Hela-S3	cervix
26	chr12:10849800-10868600	Strong transcription	A549	lung
27	chr12:10849800-10869200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:10849800-10869200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr12:10849800-10870400	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr12:10849800-10871000	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr12:10850000-10869000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr12:10850000-10870000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:10850000-10873800	Weak transcription	Fetal Brain Male	brain
34	chr12:10850600-10869200	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr12:10850800-10867200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr12:10850800-10870400	Strong transcription	Fetal Muscle Trunk	muscle
37	chr12:10852400-10873600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr12:10852600-10868000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:10854000-10867800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr12:10854400-10868200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr12:10854400-10869200	Weak transcription	Small Intestine	intestine
42	chr12:10854600-10867800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr12:10854600-10868000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr12:10854600-10868200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr12:10854800-10873600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr12:10855200-10867400	Weak transcription	Fetal Intestine Small	intestine
47	chr12:10855200-10868000	Strong transcription	NHLF	lung
48	chr12:10855800-10867400	Strong transcription	K562	blood
49	chr12:10858400-10868600	Strong transcription	NH-A	brain
50	chr12:10858600-10867600	Strong transcription	Muscle Satellite Cultured Cells	--

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