Variant report

Variant	rs12233703
Chromosome Location	chr4:143630177-143630178
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143537607..143539576-chr4:143628828..143631506,2	MCF-7	breast:
2	chr4:143629918..143632766-chr4:143633001..143634713,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1031104	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10857399	0.84[CEU][hapmap]
rs11100754	0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1116690	0.82[ASN][1000 genomes]
rs11943397	0.80[JPT][hapmap]
rs11944455	0.85[ASN][1000 genomes]
rs12500698	0.82[ASN][1000 genomes]
rs12644329	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13109603	0.86[ASN][1000 genomes]
rs13109664	0.86[ASN][1000 genomes]
rs13119090	0.86[ASN][1000 genomes]
rs13141925	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13435565	0.81[EUR][1000 genomes]
rs1364922	0.84[ASN][1000 genomes]
rs1373032	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1373036	0.83[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs1373041	0.82[ASN][1000 genomes]
rs1441418	0.92[CHB][hapmap]
rs1443185	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443186	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1443187	0.96[CEU][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17016768	0.85[JPT][hapmap]
rs17732791	0.83[EUR][1000 genomes]
rs179508	0.85[EUR][1000 genomes]
rs1899565	0.81[JPT][hapmap]
rs191762	0.86[CEU][hapmap];0.92[CHB][hapmap];0.80[JPT][hapmap];0.84[EUR][1000 genomes]
rs1961836	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992417	0.82[EUR][1000 genomes]
rs1992418	0.83[EUR][1000 genomes]
rs2120158	0.80[JPT][hapmap]
rs2218240	1.00[CHB][hapmap]
rs28420913	0.81[EUR][1000 genomes]
rs3113593	0.87[EUR][1000 genomes]
rs331945	0.85[JPT][hapmap]
rs331948	0.85[EUR][1000 genomes]
rs331949	0.85[EUR][1000 genomes]
rs331950	0.85[EUR][1000 genomes]
rs331951	0.87[EUR][1000 genomes]
rs331963	0.85[EUR][1000 genomes]
rs34442253	0.83[EUR][1000 genomes]
rs4690698	0.92[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4690699	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4690728	1.00[CHB][hapmap]
rs4690730	0.84[CHB][hapmap]
rs6537123	0.87[ASN][1000 genomes]
rs6537124	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs6811022	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6813458	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6816424	0.82[EUR][1000 genomes]
rs6819498	0.81[EUR][1000 genomes]
rs6830053	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6830886	0.82[ASN][1000 genomes]
rs6831927	0.81[EUR][1000 genomes]
rs6839894	0.86[ASN][1000 genomes]
rs6844306	0.81[EUR][1000 genomes]
rs6845583	0.81[EUR][1000 genomes]
rs6852570	0.89[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs7434705	0.86[ASN][1000 genomes]
rs7441478	0.86[ASN][1000 genomes]
rs7666140	0.85[JPT][hapmap]
rs7680076	0.86[ASN][1000 genomes]
rs7680631	0.86[ASN][1000 genomes]
rs7695514	0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7698691	0.83[ASN][1000 genomes]
rs966457	0.84[EUR][1000 genomes]
rs979194	0.84[ASN][1000 genomes]
rs979195	0.84[ASN][1000 genomes]
rs979196	0.84[ASN][1000 genomes]
rs9994364	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
2	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143627200-143630600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
4	chr4:143628200-143630600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143628200-143631600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143628200-143631600	ZNF genes & repeats	Dnd41	blood
7	chr4:143628600-143630400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
8	chr4:143628800-143630200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr4:143628800-143631000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:143628800-143631400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr4:143628800-143632000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr4:143629200-143630200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:143629600-143630200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:143629600-143630200	Enhancers	Primary T cells fromperipheralblood	blood
15	chr4:143629600-143630800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:143629600-143630800	ZNF genes & repeats	Aorta	Aorta
17	chr4:143629600-143634000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:143629800-143630200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
19	chr4:143629800-143634400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:143630000-143630200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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