Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1223510	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223512	0.96[ASN][1000 genomes]
rs1223521	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223527	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1223531	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223534	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223538	1.00[CEU][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17375327	1.00[CHB][hapmap]
rs1937766	1.00[CHB][hapmap]
rs1937768	1.00[CHB][hapmap]
rs2186159	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35596191	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6458639	0.82[CHB][hapmap]
rs6458677	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6909002	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6921616	1.00[CHB][hapmap]
rs7740162	1.00[CHB][hapmap]
rs7744129	1.00[CHB][hapmap]
rs7769033	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1223520	JARID2	cis	parietal	SCAN
rs1223520	ERVFRDE1	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13124400-13137800	Weak transcription	Pancreas	Pancrea
2	chr6:13128200-13139600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:13128400-13139000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:13132000-13138400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:13132600-13139200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:13132800-13137800	Weak transcription	Left Ventricle	heart
7	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
8	chr6:13133200-13138600	Weak transcription	Right Ventricle	heart
9	chr6:13135800-13138200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:13135800-13138400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:13136800-13139200	Enhancers	Fetal Heart	heart
12	chr6:13137000-13139400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:13137000-13141200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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