Variant report

Variant	rs1223527
Chromosome Location	chr6:13142835-13142836
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1223510	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223512	0.96[ASN][1000 genomes]
rs1223520	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223521	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223529	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1223531	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223534	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223538	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2186159	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35596191	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6458677	0.96[EUR][1000 genomes]
rs6909002	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
2	chr6:13138600-13143200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:13138800-13143800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:13138800-13144400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:13140400-13146000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:13140400-13147800	Weak transcription	Fetal Kidney	kidney
7	chr6:13142200-13145600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:13142400-13145400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:13142400-13145400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:13142400-13145600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:13142400-13159400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:13142600-13145200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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