Variant report

Variant	rs1223534
Chromosome Location	chr6:13151226-13151227
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1223510	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1223520	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223521	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1223527	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223529	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1223531	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1223538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1223541	0.88[JPT][hapmap]
rs1223545	0.88[JPT][hapmap]
rs2186159	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35596191	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6458677	0.91[EUR][1000 genomes]
rs6909002	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13132800-13153000	Weak transcription	Aorta	Aorta
2	chr6:13142400-13159400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:13146000-13158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:13146000-13159200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:13146400-13152600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:13146400-13152800	Weak transcription	Left Ventricle	heart
7	chr6:13147200-13152600	Weak transcription	Fetal Heart	heart
8	chr6:13147400-13153000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:13147800-13152600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:13148000-13153000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:13149600-13153000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:13149800-13152600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:13149800-13152600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr6:13149800-13152800	Weak transcription	Brain Anterior Caudate	brain
15	chr6:13149800-13153000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:13150000-13152600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:13150000-13152600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:13150000-13152600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:13150000-13152800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:13150000-13153000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:13150000-13153000	Weak transcription	Right Ventricle	heart
22	chr6:13150000-13153600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr6:13150000-13175600	Weak transcription	Lung	lung
24	chr6:13150200-13152600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:13150200-13152800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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