Variant report
| Variant | rs12239042 |
|---|---|
| Chromosome Location | chr1:225546466-225546467 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10495232 | 1.00[EUR][1000 genomes] |
| rs10495235 | 1.00[EUR][1000 genomes] |
| rs11805350 | 1.00[EUR][1000 genomes] |
| rs13376645 | 0.91[YRI][hapmap] |
| rs1480102 | 1.00[EUR][1000 genomes] |
| rs16844321 | 1.00[EUR][1000 genomes] |
| rs16844324 | 1.00[EUR][1000 genomes] |
| rs16844328 | 1.00[EUR][1000 genomes] |
| rs16844331 | 1.00[EUR][1000 genomes] |
| rs16844347 | 1.00[EUR][1000 genomes] |
| rs16844357 | 1.00[EUR][1000 genomes] |
| rs2153246 | 1.00[EUR][1000 genomes] |
| rs56918103 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6664529 | 1.00[EUR][1000 genomes] |
| rs6675157 | 1.00[EUR][1000 genomes] |
| rs6675162 | 1.00[EUR][1000 genomes] |
| rs6693582 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6699883 | 1.00[EUR][1000 genomes] |
| rs73136911 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73136918 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7512125 | 1.00[EUR][1000 genomes] |
| rs7519130 | 1.00[EUR][1000 genomes] |
| rs7536912 | 1.00[EUR][1000 genomes] |
| rs7551251 | 1.00[EUR][1000 genomes] |
| rs769297 | 1.00[EUR][1000 genomes] |
| rs9803691 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv945672 | chr1:225339532-225561349 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv873226 | chr1:225347689-225555602 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
