Variant report

Variant	rs12243925
Chromosome Location	chr10:119162229-119162230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:119150900..119153984-chr10:119161520..119164419,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10082463	0.82[EUR][1000 genomes]
rs10082507	0.88[EUR][1000 genomes]
rs10787768	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10787769	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10787771	0.81[AMR][1000 genomes]
rs10787772	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10886069	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11197938	0.81[EUR][1000 genomes]
rs11197945	0.88[EUR][1000 genomes]
rs11197957	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11197961	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11197983	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11197985	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12221325	0.88[EUR][1000 genomes]
rs12249877	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12250377	0.88[EUR][1000 genomes]
rs12260782	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12572369	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12573252	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1860407	0.83[AMR][1000 genomes]
rs2153714	0.83[AMR][1000 genomes]
rs2283142	0.88[EUR][1000 genomes]
rs363262	0.86[EUR][1000 genomes]
rs363279	0.83[EUR][1000 genomes]
rs363296	0.88[EUR][1000 genomes]
rs4751621	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4751622	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4752051	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4752052	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4752055	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752056	0.83[AMR][1000 genomes]
rs7090219	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72825561	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12243925	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119151800-119164400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:119159200-119163000	Weak transcription	Liver	Liver
3	chr10:119159600-119164400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:119159800-119162400	Weak transcription	HepG2	liver
5	chr10:119159800-119164000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:119160000-119172400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr10:119161800-119163200	Enhancers	K562	blood
8	chr10:119162200-119166200	Weak transcription	Primary hematopoietic stem cells	blood

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