Variant report

Variant	rs12245397
Chromosome Location	chr10:119166074-119166075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11197989	0.84[AMR][1000 genomes]
rs12252333	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61866563	0.81[EUR][1000 genomes]
rs7072734	1.00[ASN][1000 genomes]
rs7101309	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12245397	SLC18A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119160000-119172400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:119162200-119166200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:119164400-119170200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:119164600-119170200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:119164800-119166200	Weak transcription	K562	blood
6	chr10:119164800-119167800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:119164800-119173400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:119165000-119166600	Enhancers	HepG2	liver
9	chr10:119165000-119167600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:119165200-119167600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr10:119165200-119170400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:119165800-119170200	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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