Variant report

Variant	rs12248117
Chromosome Location	chr10:52635427-52635428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52625085..52626939-chr10:52633386..52637497,3	K562	blood:
2	chr10:52634911..52636509-chr10:52637440..52639619,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10994484	1.00[AMR][1000 genomes]
rs10994486	1.00[AMR][1000 genomes]
rs10994652	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241999	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242265	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12245610	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246868	1.00[AMR][1000 genomes]
rs12247876	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248603	1.00[AMR][1000 genomes]
rs12250671	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250710	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251965	1.00[AMR][1000 genomes]
rs12252902	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254249	0.80[YRI][hapmap]
rs12255568	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256013	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12257587	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258558	1.00[AMR][1000 genomes]
rs12261175	1.00[AMR][1000 genomes]
rs12262186	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263224	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266425	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268784	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12268905	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16909340	1.00[AMR][1000 genomes]
rs4604823	1.00[AMR][1000 genomes]
rs7077103	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7078064	1.00[AMR][1000 genomes]
rs7082887	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7094591	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7099856	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52619800-52639800	Weak transcription	Fetal Intestine Large	intestine
3	chr10:52622800-52643000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:52629600-52642400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:52631400-52646600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:52632600-52640000	Weak transcription	Pancreas	Pancrea
7	chr10:52632800-52636000	Enhancers	Liver	Liver
8	chr10:52634200-52635600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:52634600-52636200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr10:52634800-52635800	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr10:52635200-52640000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links