Variant report

Variant	rs1224952
Chromosome Location	chr11:76546589-76546590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76545387..76548073-chr11:76553692..76555728,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1149577	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1224951	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225127	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225129	0.83[EUR][1000 genomes]
rs1225131	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1225132	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1225133	0.81[EUR][1000 genomes]
rs1225134	0.83[EUR][1000 genomes]
rs1225135	0.83[EUR][1000 genomes]
rs1225136	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs1225137	0.83[EUR][1000 genomes]
rs1225139	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1225140	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1225141	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs1225147	0.83[EUR][1000 genomes]
rs1225149	0.82[EUR][1000 genomes]
rs1234832	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1235157	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs1660579	0.87[CEU][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2451908	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76535400-76549000	Weak transcription	Small Intestine	intestine
2	chr11:76536800-76547800	Weak transcription	Left Ventricle	heart
3	chr11:76537200-76547200	Weak transcription	Spleen	Spleen
4	chr11:76537400-76547000	Weak transcription	Hela-S3	cervix
5	chr11:76542000-76547200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:76542000-76547200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:76542200-76546800	Weak transcription	K562	blood
8	chr11:76542200-76547800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:76542400-76547000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:76542400-76547000	Weak transcription	Pancreas	Pancrea
11	chr11:76542400-76547200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:76542400-76547200	Weak transcription	Colonic Mucosa	Colon
13	chr11:76542400-76547200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:76542400-76547400	Weak transcription	NHEK	skin
15	chr11:76542400-76547600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:76542400-76547600	Weak transcription	Fetal Lung	lung
17	chr11:76542400-76547600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:76542400-76548800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:76542600-76547200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:76544000-76547200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr11:76544600-76548800	Enhancers	Fetal Stomach	stomach
22	chr11:76544800-76547200	Weak transcription	Esophagus	oesophagus
23	chr11:76545000-76551200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:76545200-76547000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:76545200-76547200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:76545200-76547800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:76545200-76548000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:76545200-76548200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:76545400-76546800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr11:76545400-76547200	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:76545400-76547400	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:76545800-76548600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:76546000-76547000	Weak transcription	Placenta	Placenta
34	chr11:76546000-76547000	Weak transcription	Lung	lung
35	chr11:76546000-76550600	Enhancers	Adipose Nuclei	Adipose
36	chr11:76546400-76551200	Enhancers	Rectal Mucosa Donor 31	rectum

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