Variant report

Variant	rs12250377
Chromosome Location	chr10:119068437-119068438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10082463	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10082478	0.90[AMR][1000 genomes]
rs10082507	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10787767	0.90[AMR][1000 genomes]
rs10787768	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10787769	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10787772	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10886058	0.90[AMR][1000 genomes]
rs10886069	0.86[EUR][1000 genomes]
rs11197938	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11197945	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11197957	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11197961	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197983	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11197985	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12221325	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243925	0.88[EUR][1000 genomes]
rs12249877	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12260782	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12265713	0.90[AMR][1000 genomes]
rs12572369	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12573252	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17096103	0.80[AMR][1000 genomes]
rs2255321	0.88[AMR][1000 genomes]
rs2283142	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2532808	0.81[ASN][1000 genomes]
rs2532809	0.81[AMR][1000 genomes]
rs363227	0.81[AMR][1000 genomes]
rs363228	0.81[AMR][1000 genomes]
rs363229	0.81[AMR][1000 genomes]
rs363238	0.90[AMR][1000 genomes]
rs363256	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs363262	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs363271	0.81[AMR][1000 genomes]
rs363272	0.81[AMR][1000 genomes]
rs363279	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs363296	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs363303	0.82[AMR][1000 genomes]
rs4751621	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4751622	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4752048	0.90[AMR][1000 genomes]
rs4752051	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752052	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4752055	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7090219	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72825515	0.90[AMR][1000 genomes]
rs72825561	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12250377	PDZD8	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119041400-119101200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:119041800-119071600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:119043000-119069400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:119043000-119094400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:119044800-119077200	Weak transcription	NHDF-Ad	bronchial
6	chr10:119045000-119070800	Weak transcription	Gastric	stomach
7	chr10:119045000-119081800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:119045400-119071200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:119045600-119078600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:119049200-119070800	Weak transcription	NH-A	brain
11	chr10:119049400-119070000	Weak transcription	HSMM	muscle
12	chr10:119049400-119071200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:119049400-119071400	Weak transcription	Aorta	Aorta
14	chr10:119049400-119071400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:119049400-119074000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:119049600-119075800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:119049800-119068800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:119049800-119069600	Weak transcription	HUVEC	blood vessel
19	chr10:119049800-119070400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:119049800-119070600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:119049800-119071400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr10:119049800-119074000	Weak transcription	HepG2	liver
23	chr10:119049800-119081800	Weak transcription	Left Ventricle	heart
24	chr10:119049800-119100600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:119049800-119101400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:119049800-119102400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:119050000-119070800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:119050000-119071400	Weak transcription	Liver	Liver
29	chr10:119050000-119077000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:119050000-119093800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr10:119050000-119101600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:119057800-119069800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr10:119059600-119071400	Weak transcription	Primary B cells from cord blood	blood
34	chr10:119060200-119081600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:119060200-119093200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:119060800-119068600	Weak transcription	Primary T cells from cord blood	blood
37	chr10:119061400-119077200	Weak transcription	Fetal Kidney	kidney
38	chr10:119061800-119071800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:119063400-119069000	Weak transcription	Thymus	Thymus
40	chr10:119063600-119070200	Weak transcription	A549	lung
41	chr10:119063800-119071200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:119063800-119071400	Weak transcription	Fetal Intestine Small	intestine
43	chr10:119063800-119076000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:119063800-119081800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:119063800-119082000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:119063800-119086400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:119063800-119092000	Weak transcription	Fetal Stomach	stomach
48	chr10:119063800-119113200	Weak transcription	Fetal Thymus	thymus
49	chr10:119064000-119070400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr10:119064000-119074000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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