Variant report

Variant	rs1225127
Chromosome Location	chr11:76547752-76547753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76546670..76552147-chr11:76556220..76560576,6	K562	blood:
2	chr11:76547374..76550137-chr11:76551533..76553464,2	K562	blood:
3	chr11:76545387..76548073-chr11:76553692..76555728,2	MCF-7	breast:
4	chr11:76520966..76521849-chr11:76547711..76548249,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1149577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149626	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1224951	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1224952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225129	0.85[EUR][1000 genomes]
rs1225131	0.85[EUR][1000 genomes]
rs1225132	0.85[EUR][1000 genomes]
rs1225133	0.83[EUR][1000 genomes]
rs1225134	0.85[EUR][1000 genomes]
rs1225135	0.85[EUR][1000 genomes]
rs1225136	0.85[EUR][1000 genomes]
rs1225137	0.85[EUR][1000 genomes]
rs1225139	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1225140	0.85[EUR][1000 genomes]
rs1225141	0.85[EUR][1000 genomes]
rs1225147	0.85[EUR][1000 genomes]
rs1225149	0.84[EUR][1000 genomes]
rs1234832	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1235157	0.85[EUR][1000 genomes]
rs1660579	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2451908	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76535400-76549000	Weak transcription	Small Intestine	intestine
2	chr11:76536800-76547800	Weak transcription	Left Ventricle	heart
3	chr11:76542200-76547800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:76542400-76548800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:76544600-76548800	Enhancers	Fetal Stomach	stomach
6	chr11:76545000-76551200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:76545200-76547800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr11:76545200-76548000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:76545200-76548200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:76545800-76548600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:76546000-76550600	Enhancers	Adipose Nuclei	Adipose
12	chr11:76546400-76551200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:76546800-76548800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:76546800-76551600	Enhancers	K562	blood
15	chr11:76547000-76547800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:76547000-76548200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:76547000-76548200	Enhancers	HUVEC	blood vessel
18	chr11:76547000-76548400	Enhancers	A549	lung
19	chr11:76547000-76549600	Enhancers	Hela-S3	cervix
20	chr11:76547000-76549600	Enhancers	HMEC	breast
21	chr11:76547000-76550000	Enhancers	Gastric	stomach
22	chr11:76547000-76550000	Enhancers	Pancreas	Pancrea
23	chr11:76547000-76550600	Enhancers	Lung	lung
24	chr11:76547000-76550800	Enhancers	Placenta	Placenta
25	chr11:76547000-76551200	Enhancers	Duodenum Mucosa	Duodenum
26	chr11:76547000-76551200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:76547200-76547800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:76547200-76547800	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:76547200-76548000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:76547200-76548000	Enhancers	NHDF-Ad	bronchial
31	chr11:76547200-76549200	Enhancers	Spleen	Spleen
32	chr11:76547200-76549600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:76547200-76549600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr11:76547200-76550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr11:76547200-76550400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:76547200-76550400	Enhancers	Fetal Muscle Leg	muscle
37	chr11:76547200-76550600	Enhancers	Colonic Mucosa	Colon
38	chr11:76547200-76550600	Enhancers	Esophagus	oesophagus
39	chr11:76547400-76547800	Enhancers	Colon Smooth Muscle	Colon
40	chr11:76547400-76548000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:76547400-76548000	Weak transcription	Right Ventricle	heart
42	chr11:76547400-76548000	Enhancers	NHEK	skin
43	chr11:76547400-76548200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:76547400-76548200	Enhancers	Fetal Muscle Trunk	muscle
45	chr11:76547400-76549600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:76547400-76551200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:76547600-76547800	Bivalent Enhancer	Osteobl	bone
48	chr11:76547600-76548000	Enhancers	Brain Angular Gyrus	brain
49	chr11:76547600-76548000	Flanking Active TSS	Stomach Mucosa	stomach
50	chr11:76547600-76548000	Enhancers	Stomach Smooth Muscle	stomach

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