Variant report

Variant	rs1225129
Chromosome Location	chr11:76551138-76551139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76546670..76552147-chr11:76556220..76560576,6	K562	blood:
2	chr11:76548072..76552147-chr11:76556220..76559677,3	K562	blood:
3	chr11:76494067..76496356-chr11:76549839..76551927,2	K562	blood:
4	chr11:76551001..76553533-chr11:76566118..76568951,2	K562	blood:

Variant related genes	Relation type
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1149577	0.84[EUR][1000 genomes]
rs1149626	0.83[EUR][1000 genomes]
rs1224951	0.85[EUR][1000 genomes]
rs1224952	0.83[EUR][1000 genomes]
rs1225127	0.85[EUR][1000 genomes]
rs1225131	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225132	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225133	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1225134	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225135	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225136	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225137	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225139	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1225140	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225141	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225144	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225147	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225149	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12291376	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1234832	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1235157	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372045	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1660579	0.83[EUR][1000 genomes]
rs2119455	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2451908	0.80[EUR][1000 genomes]
rs6592671	0.82[EUR][1000 genomes]
rs894065	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs920512	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76545000-76551200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:76546400-76551200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr11:76546800-76551600	Enhancers	K562	blood
4	chr11:76547000-76551200	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:76547000-76551200	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr11:76547400-76551200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:76548000-76551400	Enhancers	Stomach Mucosa	stomach
8	chr11:76548200-76552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:76548600-76552000	Enhancers	HUVEC	blood vessel
10	chr11:76549400-76551200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:76549600-76561000	Weak transcription	Right Atrium	heart
12	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr11:76550000-76551200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:76550000-76551200	Enhancers	Hela-S3	cervix
16	chr11:76550000-76551200	Enhancers	HMEC	breast
17	chr11:76550200-76551200	Enhancers	Fetal Intestine Large	intestine
18	chr11:76550200-76551200	Enhancers	Fetal Intestine Small	intestine
19	chr11:76550200-76551200	Enhancers	NHEK	skin
20	chr11:76550200-76551800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr11:76550600-76551200	Bivalent Enhancer	Small Intestine	intestine
22	chr11:76550600-76552600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:76550600-76553000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:76550600-76566400	Weak transcription	Lung	lung
25	chr11:76550800-76551200	Enhancers	A549	lung
26	chr11:76550800-76553200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:76551000-76551400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:76551000-76551400	Weak transcription	Primary monocytes fromperipheralblood	blood

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