Variant report

Variant	rs1225135
Chromosome Location	chr11:76552392-76552393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76551458..76554014-chr11:76570616..76573436,2	MCF-7	breast:
2	chr11:76551001..76553533-chr11:76566118..76568951,2	K562	blood:
3	chr11:76547374..76550137-chr11:76551533..76553464,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1149577	0.84[EUR][1000 genomes]
rs1149626	0.83[EUR][1000 genomes]
rs1224951	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1224952	0.83[EUR][1000 genomes]
rs1225127	0.85[EUR][1000 genomes]
rs1225129	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225131	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225132	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1225133	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1225134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225136	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225139	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1225140	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225141	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225144	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225147	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1225149	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12291376	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1234832	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1235157	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1372045	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1660579	0.83[EUR][1000 genomes]
rs2119455	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2451908	0.80[EUR][1000 genomes]
rs6592671	0.82[EUR][1000 genomes]
rs894065	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs920512	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76548200-76552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:76549600-76561000	Weak transcription	Right Atrium	heart
3	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:76550600-76552600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:76550600-76553000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:76550600-76566400	Weak transcription	Lung	lung
8	chr11:76550800-76553200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:76551200-76555400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:76551600-76553000	Weak transcription	K562	blood
11	chr11:76551600-76555200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:76551600-76558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:76551800-76555600	Weak transcription	Monocytes-CD14+_RO01746	blood

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