Variant report

Variant	rs12252168
Chromosome Location	chr10:50525646-50525647
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10857468	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416329	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571426	0.92[ASN][1000 genomes]
rs12572137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12573530	0.92[ASN][1000 genomes]
rs2377942	0.94[ASN][1000 genomes]
rs34752051	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34838288	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59753859	0.94[ASN][1000 genomes]
rs61848596	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6537530	0.90[ASN][1000 genomes]
rs7916111	0.80[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7923735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv895376	chr10:50480164-50557211	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50517200-50530600	Weak transcription	Pancreas	Pancrea
2	chr10:50517400-50526400	Weak transcription	K562	blood
3	chr10:50520600-50526400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:50522000-50526200	Weak transcription	Spleen	Spleen
5	chr10:50522000-50526800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:50522000-50528200	Weak transcription	Right Atrium	heart
7	chr10:50522200-50526200	Weak transcription	Fetal Heart	heart
8	chr10:50523200-50525800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50523200-50526200	Weak transcription	Right Ventricle	heart
10	chr10:50523200-50528400	Weak transcription	Psoas Muscle	Psoas
11	chr10:50523600-50526200	Weak transcription	Left Ventricle	heart
12	chr10:50524200-50526200	Strong transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:50524600-50528600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:50525200-50526800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr10:50525200-50529000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr10:50525600-50526400	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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