Variant report

Variant	rs12259435
Chromosome Location	chr10:50786698-50786699
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10857512	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857513	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857514	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857515	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10857516	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11101137	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs11101152	0.88[ASN][1000 genomes]
rs11101167	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11101168	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11101170	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11101171	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11101172	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101174	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11527805	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs11594945	0.86[CHB][hapmap]
rs12218602	0.86[CHB][hapmap]
rs12219170	0.88[ASN][1000 genomes]
rs12220085	0.95[CHB][hapmap]
rs12411620	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12413113	0.86[CHB][hapmap]
rs12415597	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17177717	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917799	0.86[CHB][hapmap]
rs2222638	0.86[CHB][hapmap]
rs2228528	0.82[CHB][hapmap]
rs2281794	0.95[CHB][hapmap]
rs3750748	0.95[CHB][hapmap]
rs3793788	0.82[CHB][hapmap]
rs4253004	0.88[ASN][1000 genomes]
rs4253013	0.95[CHB][hapmap];0.85[CHD][hapmap]
rs4253043	0.95[CHB][hapmap];0.88[CHD][hapmap]
rs4253060	0.95[CHB][hapmap];0.85[CHD][hapmap]
rs4253082	0.81[CHB][hapmap]
rs4253095	0.95[CHB][hapmap]
rs60981594	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv831867	chr10:50607857-50788751	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3346476	chr10:50610853-50987802	Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3385048	chr10:50610942-50988537	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50780000-50787400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:50781200-50792000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:50782200-50790200	Weak transcription	Osteobl	bone
4	chr10:50782600-50787200	Weak transcription	Hela-S3	cervix
5	chr10:50786600-50786800	Bivalent Enhancer	Placenta	Placenta

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